Helical Structures

Crystalline, Two-dimensional Structures

Crystalline, Three-dimensional Structures

Single Particles With Point Group Symmetry - Icosahedral

Single Particles With Point Group Symmetry - Other

Single, Assymetric Particles (CI Point Group Symmetry

Tomography

Meeting Abstracts, Newsletters and Bulletins

DeRosier, D. J. & Klug, A. (1968) Reconstruction of Three
Dimensional Structures from Electron Micrographs. *Nature ***217:130-134.**

Crowther, R. A., D. J. DeRosier and A. Klug (1970) The reconstruction
of a three-dimensional structure from projections and its application
to electron microscopy. *Proc. Roy. Soc. Lond.*** A 317:319-340.**

DeRosier, D. J. (1971) The reconstruction of three-dimensional
images from electron micrographs. *Contemp. Phys.* **12:437-452.**

Klug, A. (1971) III. Applications of Image Analysis Techniques
in Electron Microscopy: Optical Diffraction and Filtering and
Three-Dimensional Reconstructions from Electron Micrographs. *Phil.
Trans. R. Soc. Lond. B.*** 261:173-179.**

Lake, J. A. (1972) Biological Studies. __Optical Transforms__
(Ed. H. Lipson) Academic Press **pp. 153-188.**

Vainshtein, B. K. (1973) Three-dimensional electron microscopy
of biological macromolecules. *Sov. Phys.-Usp.*** 16:185-206.**

Crowther, R. A. and A. Klug (1975) Structural analysis of macromolecular
assemblies by image reconstruction from electron micrographs.
*Ann. Rev. Biochem. ***44:161-182.**

Misell, D. L. (1978) Image analysis, enhancement and interpretation.
*Pract. Meth. Elec. Microsc. (Ed. A. M. Glauert)North-Holland
Pub. Co., Amsterdam* **7:1-305.**

Saxton, W. O. (1978). Computer techniques for image processing
in electron microscopy. __Adv. in Electronics and Electron Physics,
Supplement10__ . (Eds. L. Marton & C. Marton), Academic
Press, N. Y.

Vainshtein, B. K. (1978) Electron microscopical analysis of the
three-dimensional structure of biological macromolecules. *Adv.
Opt. Elec. Microsc.* **7:281-377.**

Frank, J. (1979) Image analysis in electron microscopy. *Journal
of Microscopy* **117(1):25-38.**

Hoppe, W. (1979) Three-dimensional electron microscopy of individual
structures: Crystallography of 'Crystals' consisting of a single
unit cell. *Chemica Scripta ***14:227-243.**

Klug, A. (1979) Image analysis and reconstruction in the electron
microscopy of biological macromolecules. *Chemica Scripta ***14:245-256.**

Aebi, U., W. Fowler and P. R. Smith (1982) Three-dimensional structure
of protein determined by electron microscopy. *Ultramicrosc.***
8:191-206.**

Steven, A. C. (1981) Visualization of virus structure in three
dimensions. *Meth. Cell Biol.*** 22:297-323.**

Barth, M., Bryan, R. K., & Hegerl, R. (1989) Approximation
of missing-cone data in 3D electron microscopy. *Ultramicrosc.***
31: 365-378**

Frank, J. (1989) Advances in microscopy - Part 1. Three-dimensional
imaging techniques in electron microscopy. *Biotechniques ***7:164-173**.

Van Dyck, D. (1989) Three-dimensional reconstruction from two-dimensional
projections with unknown orientation, position and projection
axis. *Ultramicrosc.*** 30:435-438**.

DeRosier, D. J. & Klug, A. (1968) Reconstruction of three
dimensional structures from electron micrographs. *Nature (London)
***217:130-134.**

DeRosier, D. J. & Moore, P. B. (1970) Reconstruction of three-dimensional
images from electron micrographs of structures with helical symmetry.
*J. Mol. Biol.*** 52:355-369.**

Amos, L. A. & Klug, A. (1975) Three-dimensional image reconstructions
of the contractile tail of T4 bacteriophage (Appendix: Combination
of data from helical particles: Correlation and selection. By
L. A. Amos). *J. Mol. Biol.*** 99:51-73.**

Smith, P. R., U. Aebi, R. Josephs and M. Kessel (1976) Studies
of the structure of the T4 bacteriophage tail sheath I. The recovery
of three-dimensional structural information from the extended
sheath (Appendix: The determination of the helical screw angle
of a helical particle from its diffraction pattern). *J. Mol.
Biol. ***106:243-275.**

Stewart, M. (1988) Computer image processing of electron micrographs
of biological structures with helical symmetry. *J. Elec. Microsc.
Tech. ***9:325-358.**

Moody, M. F. (1990) Image analysis of electron micrographs. In
__Biophysical Electron Microscopy: Basic Concepts and Modern
Techniques__ (P. W. Hawkes & U. Valdre, eds.) Academic Press,
New York **pp. 170-197,208-222**.

Morgan, D. G. and D. DeRosier (1992) Processing images of helical
structures: A new twist. *Ultramicrosc. ***46:263-285.**

Henderson, R. & Unwin, P. N. T. (1975) Three-dimensional model
of purple membrane obtained by electron microscopy. *Nature
(London)*** 257:28-32.**

Fuller, S. D. (1981) Three-dimensional reconstruction of membrane
protein crystals. *Methods in Cell Biol.*** 22:251-296.**

Amos, L. A., R. Henderson and P. N. T. Unwin (1982) Three-dimensional
structure determination by electron microscopy of two-dimensional
crystals. *Prog. Biophys. Mol. Biol.* **39:183-231.**

Chiu., W. (1982). High-resolution electron microscopy of unstained,
hydrated protein crystals. __Electron Microscopy of Proteins__.
(Ed. J. R. Harris)Academic Press, N. Y. 233-259.

Glaeser, R. M. (1985) Electron crystallography of biological macromolecules.
*Ann. Rev. Phys. Chem.* **36:243-275.**

Crowther, R. A.and P. K. Luther (1984) Three-dimensional reconstruction
from a single oblique section of fish muscle M-band. *Nature
(London)*** 307:569-570.**

Crowther, R. A., P. K. Luther and K. A. Taylor (1990) Computation
of a three dimensional image of a periodic specimen from a single
view of an oblique section. *Elect. Microsc. Rev.* **3:29-42.**

Taylor, K. A. and R. A. Crowther (1991) A protocol for 3D image
reconstruction from a single image of an oblique section. *Ultramicrosc*
**38:85-103.**

Winkelmann, D. A., T. S. Baker, & I. Rayment (1991) Three-dimensional
structure of myosin subfragment 1 from electron microscopy of
sectioned crystals. *J. Cell Biol.* **114:701-713**.

Winkler, H. and K. A. Taylor (1996) Software for 3-D reconstruction
of images of oblique sections through 3-D crystals. *J. Struct.
Biol.* **116:241-247.**

Crowther, R. A., Amos, L. A., Finch, J. T., DeRosier, D. J. &
Klug, A. (1970) .Three dimensional reconstructions of spherical
viruses by fourier synthesis from electron micrographs *Nature***
226:421-425.**

Crowther, R. A. (1971) .Procedures for three-dimensional reconstruction
of spherical viruses by fourier synthesis from electron micrographs
*Phil. Trans. R. Soc. Lond. B.*** 261:221-230.**

Crowther, R. A. (1971) Three-dimensional reconstruction and the
architecture of spherical viruses. *Endeavour* **30:124-129.**

Fuller, S. D. (1987) .The T=4 envelope of Sindbis virus is organized
by interactions with a complementary T=3 capsid *Cell***
48:923-934.**

Baker, T. S., J. Drak & M. Bina (1988) Reconstruction of the
three-dimensional structure of Simian Virus 40 and visualization
of the chromatin core. *Proc. Natl. Acad. Sci. USA* **85:422-426.**

Baker, T. S., J. Drak & M. Bina (1989) The capsid of small
papova viruses contains 72 Pentameric capsomeres: Direct evidence
from cryo-electron microscopy of Simian virus 40. *Biophys.
J.* **55:243-253**.

Baker, T. S. and R. H. Cheng (1996) A model-based approach for
determining orientations of biological macromolecules imaged by
cryoelectron microscopy. *J. Struct. Biol.* **116:120-130.**

Fuller, S. D., S. J. Butcher, R. H. Cheng and T. S. Baker (1996)
Three-dimensional reconstruction of icosahedral particles -- The
uncommon line. *J. Struct. Biol.* **116:48-55.**

DeRosier, D. J. & Oliver, R. M. (1972) .A low resolution electron-density
map of lipoyl transsuccinylase, the core of the alpha-ketoglutarate
dehydrogenase complex *Cold Spring Harb. Symp. Quant. Biol***.
36:199-203.**

Mellema, J. E. & Klug, A. (1972) .Quaternary structure of
gastropod haemocyanin *Nature (London)*** 239:146-150.**

Frank, J., Radermacher, M., Wagenknecht, T. & Verschoor, A.
(1986) .A new method for three-dimensional reconstruction of single
macromolecules using low-dose electron microscopy *Ann. N.Y.
Acad. Sci.*** 483:77-87.**

Frank, J. and M. Rademacher (1986). Three-dimensional reconstruction
of nonperiodic macromolecular assemblies from electron micrographs.
__Advanced Techniques in Biological Electron Microscopy__ Ed.
J. K. Koehler. Berlin, Springer-Verlag.

Frank, J., M. Radermacher, T. Wagenknecht and A. Verschoor (1986).
A new method for three-dimensional reconstruction of single macro
molecules using low-dose electron microscopy. __Annals of the
New York Academy of Sciences: Recent Advances in Electron and
Light Optical imaging in biology and Medicine__ Ed. A. P. Somlyo.
New York, The N.Y. Academy of Sciences.

Radermacher, M., Wagenknecht, T., Verschoor, A. & Frank, J.
(1987) .Three-dimensional reconstruction from a single-exposure,
random conical tilt series applied to the 50S ribosomal subunit
of *Escherichia* *coli*** ***J. Microsc.***
146:113-136**.

Radermacher, M. (1988) .Three-dimensional reconstruction of single
particles from random and non random tilt series *J. Elec. Microsc.
Tech***. 9:359-394**

Frank, J. (1989) Image analysis of single macromolecules. *Elect.
Microsc. Rev.* **2:53-74.**

Frank, J. (1989) Advances in Microscopy - Part 1. Three-dimensional
imaging techniques in electron microscopy. *Biotechniques*
**7:164-173.**

Frank, J. (1990) Classification of macromolecular assemblies studied
as 'single particles'. *Quart. Rev. Biophys.* **23:281-329.**

Schatz, M. and M. VanHeel (1990) Invariant classification of molecular
views in electron micrographs. *Ultramicrosc. ***32:255-264.**

Frank, J. and M. Radermacher (1992) Three-dimensional reconstruction
of single particles negatively stained or in vitreous ice. *Ultramicrosc.
***46:241-262.**

Penczek, P., M. Radermacher and J. Frank (1992) Three-dimensional
reconstruction of single particles embedded in ice. *Ultramicrosc*
**40:33-53.**

Radermacher, M. (1994) Three-dimensional reconstruction from random
projections: Orientational alignment via Radon transforms. *Ultramicroscopy*
**53:121-136.**

Dube, P., H. Stark, E. V. orlova, M. Schatz, E. Beckmann, F. Zemlin
and M. vanHeel (1995) 3D structure of single macromolecules at
15Å resolution by cryo-microscopy and angular reconstitution.
*JMSA Proceed. Microsc. Microanal.*** 53:838-839.**

Dover, S. D., A. Elliott and A. K. Kernaghan (1981) Three-dimensional
reconstruction from images of tilted specimens: the paramyosin
filament. *JMICRO* **122:23-33.**

Olins, D. E., A. L. Olins, H. A. Levy, R. C. Durfee, S. M. Margle,
E. P. Tinnel and S. D. Dover (1983) Electron microscopy tomography:
Transcription in three dimensions. *Science* **220:498-500.**

McEwen, B. F., M. Radermacher, C. L. Rieder and J. Frank (1986)
Tomographic three-dimensional reconstruction of cilia ultrastructure
from thick sections. *Proc. Natl. Acad. Sci. USA* **83:9040-9044.**

Frank, J., B. F. McEwen, M. Radermacher, J. N. Turner and C. L.
Rieder (1987) Three-dimensional tomographic reconstruction in
high voltage electron microscopy. *J. Elec. Microsc. Tech.*
**6:193-205.**

Dierksen, K., D. Typke, R. Hegerl, A. J. Koster and W. Baumeister
(1992) Towards automatic electron tomography. *Ultramicrosc.*
**40:71-87.**

Frank, J. (1992) __Electron tomography: Three-dimensional imaging
with the transmission electron microscope__. (Plenum Prexss,
N.Y.) **pp. 1-399.**

Koster, A. J., H. Chen, J. W. Sedat and D. A. Agard (1992) Automated
microscopy for electron tomography. *Ultramicrosc.* **46:207-227.**

Dierksen, K., D. Typke, R. Hegerl and W. Baumeister (1993) Towards
automatic electron tomography II. Implementation of autofocus
and low-dose procedures. *Ultramicrosc.* **49:109-120.**

Fung, J. C., W. Liu, W. J. DeRuijter, H. Chen, C. K. Abbey, J.
W. Sedat and D. A. Agard (1996) Toward fully automated high-resolution
electron tomography. *J. Struct. Biol.* **116:181-189.**

Hessler, D., S. J. Young and M. H. Ellisman (1996) A flexible
environment for the visualization of three- dimensional biological
structures. *J. Struc. Biol.* **116:113-119.**

Kremer, J. R., D. N. Mastronarde and J. R. McIntosh (1996) Computer
visualization of three-dimensional image data using IMOD. *J.
Struc. Biol.* **116:71-76.**

McEwen, B. F. and J. Frank (1990). Application ot tomographic
3D reconstruction methods to a diverse range of biological preparations.
*Proc. XII Int'l. Cong. Elec. Microsc. (Seattle)* **1:516-517**.

McEwen, B. F., M. J. Song, A. Ruknudin, D. P. Barnard, J. Frank
and F. Sachs (1990). Tomographic three-dimensional reconstruction
of patch- clamped membranes imaged with the high-voltage EM. *Proc.
XII Int'l. Cong. Elec. Microsc. (Seattle)* **1:522-523.**

Zhang, N.-Y., B. F. McEwen and J. Frank (1990). On the use of
POCS for restoring the "missing wedge" in electron tomography.
*Proc. XII Int'l. Cong. Elec. Microsc. (Seattle)* **1:520-521**

Carragher, B., D. F. Hessler, J. E. Hinshaw, M. Martone, R. A.
Milligan, S. J. Young and M. H. Ellisman (1991). Computer-aided
image analysis and graphics in biological microscopy at higher
voltages. *Proc. Elect. Microsc. Soc. Am.* **49:438-439**.

Typke, D., K. Dierksen and W. Baumeister (1991). Automatic electron
tomography. *Proc. Elect. Microsc. Soc. Am.* **49:544-545**

Agard, D. A., A. J. Koster, M. B. Braunfeld and J. W. Sedat (1992)
Automated Data Collection for Electron Tomography. *Proc. Elect.
Microsc. Soc. Am.* **50:1044-1045.**

Frank, J. and B. F. McEwen (1992) Electron Tomography's Remaining
Problems: How to Fill the Wedge in Fourier Space and How to See
What You've Got in Real Space. *Proc. Elect. Microsc. Soc. Am.*
**50:1062-1063.**

Woodcock, C. L., R. A. Horowitz and D. A. Agard (1992) Three-Dimensional
Organization of Chromatin Fibers in situ Examined by EM Tomography.
*Proc. Elect. Microsc. Soc. Am.* **50:498-499.**

Koster, A. J., M. B. Braunfeld, J. C. Fung, C. K. Abbey, K. F.
Han, W. Liu, H. Chen, J. W. Sedat and D. A. Agard (1993) Towards
automatic three dimensional imaging of large biological structures
using intermediate voltage electron microscopy. *MSA Bull.*
**23:176-188.**

Koster, A. J., J. Walz, D. Typke, M. Nitsch and W. Baumeister
(1995) Three dimensional imaging of biological macromolecules.
*JMSA Proceed. Microsc. Microanal.*** 53:732-733.**

Liu, W., J. Fung, W. J. deRuijter, H. Chen, J. W. Sedat and D.
A. Agard (1995) Automated electron tomography: From data collection
to image processing. *JMSA Proc. Microsc. Microanal. ***53:26-27.**

Mannella, C. A., M. Marko, K. Buttle, P. Penczek, A. Leith and
J. Frank (1995) Tomographic reconstruction of mitochondria. *JMSA
Proc. Microsc. Microanal. ***53:740-741.**

Skoglund, U., L.-A. Ofverstedt, R. Burnett and G. Bricogne (1995)
Maximum entropy EM tomography: Demonstration of improved resolution
with adenovirus. *JMSA Proc. Microsc. Microanal. ***53:736-737.**

Taylor, K. A. and H. Winkler (1995) 3-D reconstruction of paracrystalline
biological specimens by tomography. *JMSA Proc. Microsc. Microanal.
***53:734-735.**

Woodcock, C. L. (1995) Practical electron tomography. *JMSA
Proc. Microsc. Microanal. ***53:742-743.**

Daberkow, I., A. J. Koster, H. R. Tietz, D. Typke and J. Walz
(1996) A system for automated electron tomography using Philps
CM series transmission electron microscopes. *Elec. Optics Bull.*
**134:27-31.**

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Last edited April 29, 1997