References for CHEM 165,265 / BIMM 162 / BGGN 262
Term Paper
References in GREEN type are no longer available
Cryo-Electron Tomography
2006
Henderson, G. P., and G. J. Jensen (2006).
Three-dimensional structure of Mycoplasma pneumoniae's attachment organelle and
a model for its role in gliding motility. Molecular Microbiology 60(2),
376-385.
Ortiz, J. O., F. Forster, J. Kurner, A. A.
Linaroudis, and W. Baumeister (2006). Mapping 70S ribosomes in intact cells by
cryoelectron tomography and pattern recognition. Journal of Structural Biology
156(2), 334-341.
2007
Bostina, M., D. Bubeck, C. Schwartz, D.
Nicastro, D. J. Filman, and J. M. Hogle (2007). Single particle cryoelectron
tomography characterization of the structure and structural variability of
poliovirus-receptor-membrane complex at 30-Angstroms resolution. Journal of
Structural Biology 160(2), 200-210.
Cyrklaff, M., A. Linaroudis, M. Boicu, P.
Chlanda, W. Baumeister, G. Griffiths, and J. Krijnes-Locker (2007). Whole cell
cryo-electron tomography reveals distinct disassembly intermediates of vaccinia
virus. In "Plos One", Vol. 2, pp. e420.
doi:410.1371/journal.pone.0000420.
Medalia, O., M. Beck, M. Ecke, I. Weber, R.
Neujahr, W. Baumeister, and G. Gerisch (2007). Organization of Actin Networks
in Intact Filopodia. Current Biology 17(1), 79-84.
2008
Deng, B., C. M. O'Connor, D. H. Kedes, and
Z. H. Zhou (2008). Cryo-electron tomography of Kaposi's sarcoma-associated
herpesvirus capsids reveals dynamic scaffolding structures essential to capsid
assembly and maturation. Journal of Structural Biology In Press, Uncorrected
Proof.
Koning, R. I., S. Zovko, M. Barcena, G. T.
Oostergetel, H. K. Koerten, N. Galjart, A. J. Koster, and A. M. Mommaas (2008).
Cryo electron tomography of vitrified fibroblasts: microtubule plus ends in
situ. Journal of Structural Biology In Press, Corrected Proof.
Konorty, M., N.
Kahana, A. Linaroudis, A. Minsky, and O. Medalia (2008). Structural Analysis of
Photosynthetic Membranes by Cryo-Electron Tomogrhaphy of Intact
Rhodopseudomonas viridis Cells. Journal of Structural Biology In Press,
Corrected Proof.
Helical Particles
2006
Sui, H., and K. H. Downing (2006).
Molecular architecture of axonemal microtubule doublets revealed by
cryo-electron tomography. Nature 442(July 27), 475-478.
Galkin, V. E., A. Orlova, O. Cherepanova,
M.-C. Lebart, and E. H. Egelman (2008). High resolution cryo-EM structure of
the F-actin-fimbrin/plastin ABD2 complex. Proceedings of the National Academy
of Sciences 105(5), 1494-1498.
Reviews
NOTE: Only Undergrads may select from these (highlighted in red)
2007
Hite, R. K., S. Raunser, and T. Walz (2007).
Revival of electron crystallography. Current Opinion in Structural Biology In
Press, Corrected Proof.
Huiskonen, J. T., and S. J. Butcher (2007).
Membrane-containing viruses with icosahedrally symmetric capsids. Current
Opinion in Structural Biology 17(2), 229-236.
Jensen, G. J., and A. Briegel (2007). How
electron cryotomography is opening a new window onto prokaryotic
ultrastructure. Current Opinion in Structural Biology 17(2), 260-267.
Lacapere, J.-J., E. Pebay-Peyroula, J.-M.
Neumann, and C. Etchebest (2007). Determining membrane protein structures:
still a challenge! Trends in Biochemical Sciences In Press, Corrected Proof.
Roux, K. H., and K. A. Taylor (2007). AIDS
virus envelope spike structure. Current Opinion in Structural Biology 17(2),
244-252.
Robinson, C. V., A. Sali, and W.
Baumeister (2007). The molecular sociology of the cell. Nature 450(7172),
973-982.
Subramaniam, S., A. Bartesaghi, J. Liu, A.
E. Bennett, and R. Sougrat (2007). Electron tomography of viruses. Current
Opinion in Structural Biology 17(5), 596-202.
Single Particles
2006
Cheng, Y., E. Wolf, M. Larvie, O. Zak, P.
Aisen, N. Grigorieff, S. C. Harrison, and T. Walz (2006). Single Particle
Reconstructions of the Transferrin-Transferrin Receptor Complex Obtained with
Different Specimen Preparation Techniques. Journal of Molecular Biology 355(5),
1048-1065.
Yonekura, K., T. Yakushi, T. Atsumi, S.
Maki-Yonekura, M. Homma, and K. Namba (2006). Electron Cryomicroscopic
Visualization of PomA/B Stator Units of the Sodium-driven Flagellar Motor in
Liposomes. Journal of Molecular Biology 357(1), 73-81.
2007
Gatsogiannis, C., A. Moeller, F. Depoix, U.
Meissner, and J. Markl (2007). Nautilus pompilius hemocyanin: 9 A cryo-EM
structure and molecular model reveal the subunit pathway and the interfaces
between the 70 functional units. Journal of Molecular Biology 374(2), 465-486.
Technical
2006
Fotin, A., T. Kirchhausen, N. Grigorieff,
S. C. Harrison, T. Walz, and Y. Cheng (2006). Structure determination of
clathrin coats to subnanometer resolution by single particle cryo-electron
microscopy. Journal of Structural Biology 156(3), 453-460.
Hsieh, C.-E., A. Leith, C. A. Mannella, J.
Frank, and M. Marko (2006). Towards high-resolution three-dimensional imaging
of native mammalian tissue: Electron tomography of frozen-hydrated rat liver
sections. Journal of Structural Biology 153(1), 1-13.
Saban, S. D., M. Silvestry, G. R. Nemerow,
and P. L. Stewart (2006). Visualization of {alpha}-Helices in a 6-Angstrom
Resolution Cryoelectron Microscopy Structure of Adenovirus Allows Refinement of
Capsid Protein Assignments. J. Virol. 80(24), 12049-12059.
Stagg, S. M., G. C. Lander, J. Pulokas, D.
Fellmann, A. Cheng, J. D. Quispe, S. P. Mallick, R. M. Avila, B. Carragher, and
C. S. Potter (2006). Automated cryoEM data acquisition and analysis of 284 742
particles of GroEL. Journal of Structural Biology 155(3), 470-481.
Yonekura, K., M. B. Braunfeld, S.
Maki-Yonekura, and D. A. Agard (2006). Electron energy filtering significantly
improves amplitude contrast of frozen-hydrated protein at 300 kV. Journal of
Structural Biology 156(3), 524-536.
2007
Nickell, S., O. Mihalache, F. Beck, R.
Hegerl, A. Korinek, and W. Baumeister (2007). Structural analysis of the 26S
proteasome by cryoelectron tomography. Biochemical and Biophysical Research
Communications 353(1), 115-120.
Sachse, C., J. Z. Chen, P.-D. Coureux, M.
E. Stroupe, M. Fandrich, and N. Grigorieff (2007). High-resolution electron
microscopy of helical specimens: A fresh look at tobacco mosaic virus. Journal
of Molecular Biology 371(3), 812-835.
Taylor, D. W., D. F. Kelly, A. Cheng, and
K. A. Taylor (2007). On the freezing and identification of lipid monolayer 2-D
arrays for cryoelectron microscopy. Journal of Structural Biology 160(3),
305-312.
2008
De Carlo, S., N. Boisset, and A. Hoenger
(2008). High-resolution single-particle 3D analysis on GroEL prepared by
cryo-negative staining. Micron In Press, Uncorrected Proof.
Viruses
2006
Chang, J., P. Weigele, J. King, W. Chiu,
and W. Jiang (2006). Cryo-EM Asymmetric Reconstruction of Bacteriophage P22
Reveals Organization of its DNA Packaging and Infecting Machinery. Structure
14(6), 1073-1082.
Effantin, G., P. Boulanger, E. Neumann, L.
Letellier, and J. F. Conway (2006). Bacteriophage T5 Structure Reveals
Similarities with HK97 and T4 Suggesting Evolutionary Relationships. Journal of
Molecular Biology 361(5), 993-1002.
Gan, L., J. A. Speir, J. F. Conway, G.
Lander, N. Cheng, B. A. Firek, R. W. Hendrix, R. L. Duda, L. Liljas, and J. E.
Johnson (2006). Capsid Conformational Sampling in HK97 Maturation Visualized by
X-Ray Crystallography and Cryo-EM. Structure 14(11), 1655-1665.
Kaufmann, B., G. E. Nybakken, P. R.
Chipman, W. Zhang, M. S. Diamond, D. H. Fremont, R. J. Kuhn, and M. G. Rossmann
(2006). West Nile virus in complex with the Fab fragment of a neutralizing
monoclonal antibody. PNAS 103(33), 12400-12404.
Pokidysheva, E., Y. Zhang, A. J. Battisti,
C. M. Bator-Kelly, P. R. Chipman, C. Xiao, G. G. Gregorio, W. A. Hendrickson,
R. J. Kuhn, and M. G. Rossmann (2006). Cryo-EM reconstruction of Dengue virus
in complex with the carbohydrate recognition domain of DC-SIGN. CELL
124(February 10), 485-493.
2007
Agirrezabala, X., J. A. Velazquez-Muriel,
P. Gomez-Puertas, S. H. W. Scheres, J. M. Carazo, and J. L. Carrascosa (2007).
Quasi-Atomic Model of Bacteriophage T7 Procapsid Shell: Insights into the
Structure and Evolution of a Basic Fold. Structure 15(4), 461-472.
Jaalinoja, H. T., J. T. Huiskonen, and S.
J. Butcher (2007). Electron Cryomicroscopy Comparison of the Architectures of
the Enveloped Bacteriophages [phi]6 and [phi]8. Structure 15(2), 157-167.
Katpally, U., K. Kakani, R. Reade, K.
Dryden, D. A. Rochon, and T. J. Smith (2007). Structures of T = 1 and T = 3
Particles of Cucumber Necrosis Virus: Evidence of Internal Scaffolding. Journal
of Molecular Biology 365(2), 502-512.
Leiman, P. G., A. J. Battisti, V. D.
Bowman, K. Stummeyer, M. Muhlenhoff, R. Gerardy-Schahn, D. Scholl, and I. J.
Molineux (2007). The structures of bacteriophages K1E and K1-5 explain
processive degradation of polysaccharide capsules and evolution of new host
specificities. Journal of Molecular Biology 371(3), 836-849.
Yu, X., M. Qiao, I. Atanasov, Z. Hu, T.
Kato, T. J. Liang, and Z. H. Zhou (2007). Cryo-electron microscopy and
three-dimensional reconstructions of hepatitis C virus particles. Virology
367(1), 126-134.
2008
Toropova, K., G. Basnak, R. Twarock, P. G.
Stockley, and N. A. Ranson (2008). The three-dimensional structure of genomic
RNA in bacteriophage MS2: Implications for assembly. Journal of Molecular
Biology 375(3), 824-836.