Cryo-Tomography (Technique)

Reference List


Daberkow, I., A. J. Koster, H. R. Tietz, D. Typke, and J. Walz (1996) A system for automated electron tomography using Philips CM series transmission electron microscopes.  Philips Elec. Optics Bul. 134:27-31.


Horowitz, R. A., A. J. Koster, J. Walz, and C. L. Woodcock (1997) Automated electron microscope tomography of frozen-hydrated chromatin:  the irregular three-dimensional zigzag architecture persists in compact, isolated fibers.  J. Struct. Biol. 120:353-362.


Sherman, M. B., J. Jakana, S. Sun, P. Matsudaira, W. Chiu, and M. F. Schmid (1997) A strategy for electron tomographic data collection and crystallographic reconstruction of biological bundles.  J. Struct. Biol. 120:245-256.


Walz, J., T. Tamura, N. Tamura, R. Grimm, W. Baumeister, and A. J. Koster (1997a) Tricorn protease exists as an icosahedral supermolecule in vivo.  Molecular Cell 1:59-65.


Walz, J., D. Typke, M. Nitsch, A. J. Koster, R. Hegerl, and W. Baumeister (1997b) Electron tomography of single ice-embedded macromolecules:  three-dimensional alignment and classification.  J. Struct. Biol. 120:387-395.


Bohm, J., A. S. Frangakis, R. Hegerl, S. Nickell, D. Typke, and W. Baumeister (2000) Toward detecting and identifying macromolecules in a cellular context: template matching applied to electron tomograms.  Proc. Natl. Acad. Sci. USA 97:14245-14250.


Frangakis, A. S., and R. Hegerl (2001) Noise reduction in electron tomographic reconstructions using nonlinear anisotropic diffusion.  J. Struct. Biol. 135:239-250.


Frangakis, A. S., J. Bohm, F. Forster, S. Nickell, D. Nicastro, D. Typke, R. Hegerl, and W. Baumeister (2002) Identification of macromolecular complexes in cryoelectron tomograms of phantom cells.  Proc. Natl. Acad. Sci. USA 99:14153-14158.


Hsieh, C. E., M. Marko, J. Frank, and C. A. Mannella (2002) Electron tomographic analysis of frozen-hydrated tissue sections.  J. Struct. Biol. 138:63-73.


McEwen, B. F., M. Marko, C. E. Hsieh, and C. Mannella (2002) Use of frozen-hydrated axonemes to assess imaging parameters and resolution limits in cryoelectron tomography.  J. Struct. Biol. 138:47-57.


Fernandez, J. J., and S. Li (2003) An improved algorithm for anisotropic nonlinear diffusion for denoising cryo-tomograms.  J. Struct. Biol. 144:152-161.


Grunewald, K., O. Medalia, A. Gross, A. C. Steven, and W. Baumeister (2003) Prospects of electron cryotomography to visualize macromolecular complexes inside cellular compartments: implications of crowding.  Biol. Chem. 100:577-591.


Iancu, C. V., E. R. Wright, J. B. Heymann, and G. J. Jensen (2006) A comparison of liquid nitrogen and liquid helium as cryogens for electron cryotomography.  J. Struct. Biol. 153:231-240.


Wright, E. R., C. V. Iancu, W. F. Tivol, and G. J. Jensen (2006) Observations on the behavior of vitreous ice at ~82 and ~12K.  J. Struct. Biol. 153:241-252.


Zheng, S. Q., B. Keszthelyi, E. Branlund, J. M. Lyle, M. B. Braunfeld, J. W. Sedat, and D. A. Agard (2007) UCSF tomography: An integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction.  J. Struct. Biol. 157:138-147.